STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catDEssential for viability in the presence of catechol; Uncharacterized protein yfiD;, DoxX, DoxX. (134 aa)    
Predicted Functional Partners:
catE
Catechol 2,3-dioxygenase; Uncharacterized protein yfiE;, Glyoxalase/bleomycin resistance protein/dioxygenase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
  
 0.901
yckC
Putative integral inner membrane protein.
  
    0.492
malQ
Maltose and maltodextrin ABC transporter subunit (ATP-binding protein).
   
   0.472
yfiC
Putative ABC transporter (ATP-binding protein).
   
   0.472
yloB
P-type calcium transport ATPase.
   
  0.463
yvaP
Putative transcriptional regulator.
       0.447
ycgP
Putative transcriptional regulator.
  
     0.421
trmF
tRNA uridine 5-carboxymethylaminomethyl modification enzyme.
    
 
 0.418
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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