Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfiVPutative transcriptional regulator (MarR family). (160 aa)    
Predicted Functional Partners:
ysmB
Putative transcriptional regulator (MarR family).
  
     0.649
ykoM
Putative transcriptional regulator (MarR family).
  
     0.634
yetL
Uncharacterized HTH-type transcriptional regulator yetL;, Bacterial regulatory protein, MarR, MarR family.
  
     0.596
yfiU
Putative efflux transporter.
 
    0.582
mprF
Lysylphosphatidylglycerol synthase; 'unknown; Similar to unknown proteins from B. subtilis'.
     
 0.521
mhqR
Transcriptional repressor (MarR family) MhqR; 'information pathways; RNA synthesis; Regulation'.
  
     0.510
yfhB
Putative isomerase.
       0.407
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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