STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhCPutative oxidoreductase (nitroreductase family). (194 aa)    
Predicted Functional Partners:
yfhB
Putative isomerase.
 
    0.639
yxeB
ABC transporter (ferrioxamine binding lipoprotein).
  
    0.610
birA
Biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor.
  
    0.545
yfiN1
Pleiotropic drug resistance protein 1; NtPDR1;, ABC-2 type transporter, ABC-2 type transporter.
  
  
 0.512
RBAM_030560
Putative multidrug ABC transporter, permease; Pleiotropic drug resistance protein 3; OsPDR9;, ABC-2, ABC-2 type transporter.
  
  
 0.512
mprF
Lysylphosphatidylglycerol synthase; 'unknown; Similar to unknown proteins from B. subtilis'.
       0.429
baeJ
Bacillaene synthesis; hybrid NRPS/PKS protein.
  
 
 0.405
yclQ
Putative iron-siderophore ABC transporter (binding lipoprotein).
  
    0.401
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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