Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfhFPutative nucleotide binding protein. (299 aa)    
Predicted Functional Partners:
yfiL
Putative ABC transporter (ATP-binding protein).
      
 0.831
recX
Regulatory protein RecX.
       0.730
yfhH
Conserved hypothetical protein.
       0.730
comGA
Membrane associated factor for DNA competence.
      
 0.677
radC
Putative DNA repair protein.
      
 0.676
yfhE
Hypothetical protein.
  
    0.621
comEA
Membrane bound high-affinity DNA-binding receptor.
      
 0.607
pksA
Putative transcriptional regulator.
   
    0.546
mntR
Transcriptional regulator (DtxR family).
   
    0.532
yfhD
Conserved hypothetical protein.
  
    0.530
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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