STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMF_0832Hypothetical protein predicted by Glimmer/Critica. (281 aa)    
Predicted Functional Partners:
yoqD
Putative DNA-binding protein anti-repressor; phage SPbeta.
       0.752
BAMF_0833
Hypothetical protein predicted by Glimmer/Critica.
       0.467
repO
Replication protein O;, Phage replication protein O, N-terminal.
       0.456
BAMF_0835
Hypothetical protein predicted by Glimmer/Critica.
       0.456
dnaC1
Replicative DNA helicase;, DNA helicase, DnaB type, DnaB-like helicase C terminal domain, DnaB: replicative DNA helicase.
       0.456
RBAM_026690
Hypothetical protein RBAM_026690.
       0.456
yqaH3
Uncharacterized protein yqaH;, Uncharacterised protein family YqaH.
       0.413
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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