STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspESmall acid-soluble spore protein (gamma-type SASP). (56 aa)    
Predicted Functional Partners:
fabL
Enoyl-acyl carrier protein reductase III.
  
    0.782
spoIIAB
Anti-sigma factor (antagonist of sigma(F)) and serine kinase.
      
 0.770
yfhS
Conserved hypothetical protein.
     
 0.761
ykzV
Conserved hypothetical protein Tiny-TM.
  
     0.704
yaaL
Conserved hypothetical protein.
  
     0.685
gerPE
Probable spore germination protein gerPE.
  
     0.632
ytzH
Conserved hypothetical protein.
  
     0.630
ygaB
Conserved hypothetical protein.
       0.612
ygaC
Putative factor.
       0.601
lonA
Class III heat-shock ATP-dependent LonA protease.
      
 0.570
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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