STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMF_0951Hypothetical protein predicted by Glimmer/Critica. (78 aa)    
Predicted Functional Partners:
BAMF_0952
Phage tail tape measure protein TP901, core region.
       0.777
BAMF_0950
Hypothetical protein predicted by Glimmer/Critica.
       0.531
BAMF_0953
Phage tail tape measure protein TP901, core region.
       0.422
lytG1
Glycoside Hydrolase Family 73; Probable N-acetylmuramidase; Peptidoglycan hydrolase; Autolysin; Lysozyme; Flags: Precursor;, Protein of unknown function DUF1306, Protein of unknown function (DUF1306).
       0.422
BAMF_0949
Hypothetical protein predicted by Glimmer/Critica.
       0.420
BAMF_0955
Phage minor structural protein, N-terminal, Protein of unknown function (DUF1142).
       0.412
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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