STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppD1Phosphate import ATP-binding protein pstB; Phosphate-transporting ATPase; ABC phosphate transporter;, ABC transporter-like, ABC transporter, nickel_nikD: nickel import ATP-binding protein NikD. (328 aa)    
Predicted Functional Partners:
oppC1
Oligopeptide transport system permease protein oppC; Stage 0 sporulation protein KC;, Binding-protein-dependent transport systems inner membrane component, Binding-protein-dependent transport system inner membrane component, nickel_nikC: nickel ABC transporter, permease subunit NikC.
 0.999
appC
Oligopeptide ABC transporter (permease).
 0.998
oppB1
Glutathione transport system permease protein gsiC;, Binding-protein-dependent transport systems inner membrane component, Binding-protein-dependent transport system inner membrane component, nickel_nikB: nickel ABC transporter, permease subunit NikB.
 
 0.997
oppA1
Periplasmic oligopeptide-binding protein; Flags: Precursor;, Bacterial extracellular solute-binding protein, family 5, Bacterial extracellular solute-binding proteins, family 5 Middle, nickel_nikA: nickel ABC transporter, periplasmic nickel-binding protein.
 
 0.990
appB
Oligopeptide ABC transporter (permease).
 
 0.989
dppC
Dipeptide ABC transporter (permease).
 
 0.984
oppC3
Oligopeptide ABC transporter (permease).
 
 0.977
appA
Oligopeptide ABC transporter (oligopeptide-binding lipoprotein); C-terminal part of AppA.
 
 0.974
appF
Oligopeptide ABC transporter (ATP-binding protein).
 
 
 
0.957
ykfD
Putative cell wall oligopeptide ABC transporter (ATP binding protein).
 
 
 
0.928
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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