STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhcNPutative lipoprotein. (163 aa)    
Predicted Functional Partners:
yhcQ
Conserved hypothetical protein.
  
    0.777
spoVAD7
SpoVAD; 3-oxoacyl-[acyl-carrier-protein] synthase 3; 3-oxoacyl-[acyl-carrier-protein] synthase III; Beta-ketoacyl-ACP synthase III; KAS III;, Stage V sporulation AD, Stage V sporulation protein AD, spore_V_AD: stage V sporulation protein AD.
  
   
 0.748
spoVAEB
Spore germinant protein.
      
 0.720
yxjB
rRNA (guanine-N1-)-methyltransferase, putative; Uncharacterized protein yxjB;, Methyltransferase type 11, Methyltransferase domain.
      
 0.657
gerKA
Spore germination protein KA;, Bacillus/Clostridium GerA spore germination protein, Bacillus/Clostridium GerA spore germination protein.
  
   
 0.616
ylaJ
Putative lipoprotein.
  
   
0.558
yhcM
Hypothetical protein.
       0.527
ypeB
Spore membrane component.
  
    0.508
yetF
Conserved hypothetical protein.
      
 0.499
yhcO
Hypothetical protein; 18: Unknown function.
       0.499
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.