STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhcSPutative secreted enzyme; sortase. (198 aa)    
Predicted Functional Partners:
yhcR
Non specific extracellular endonuclease cleaving RNA and DNA.
  
  
 0.953
dltB
Putative D-alanine esterase for lipoteichoic acid and wall teichoic acid.
      
 0.774
ytaB
Putative receptor.
      
 0.652
birA
Biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor.
      
 0.517
yhcQ
Conserved hypothetical protein.
       0.503
recJ
Putative single-strand DNA-specific exonuclease.
     
 0.461
yneB
YneB; 'other functions; Transposon and IS'.
  
     0.438
ywhB
4-oxalocrotonate tautomerase.
     
 0.400
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.