Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yheDYheD. (447 aa)    
Predicted Functional Partners:
yheC
Spore coat associated protein, similar to YheD.
 
  
0.957
yheE
Conserved hypothetical protein.
       0.857
cotJA
Protein cotJA.
  
  
 0.783
ysxE
Spore coat protein.
  
  
 0.781
yrrD
Conserved hypothetical protein; 18: Unknown function.
  
     0.738
cotE
Morphogenic spore protein.
  
  
 0.710
yheB
Conserved hypothetical protein.
       0.683
cgeB
Protein involved in maturation of the outermost layer of the spore.
  
   
 0.647
yheA
Conserved hypothetical protein.
       0.633
ywiC
Putative integral inner membrane protein.
  
     0.631
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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