STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaAAltronate hydrolase. (305 aa)    
Predicted Functional Partners:
uxaC
Galacturonate isomerase.
 
  
 0.982
ywlF
Ribose 5-phosphate epimerase.
     
 0.805
rpe
Ribulose-5-phosphate 3-epimerase.
     
 0.802
hxlA
3-hexulose-6-phosphate synthase (HPS).
     
  0.800
gndA
NADP-dependent phosphogluconate dehydrogenase; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Main glycolytic pathways', pentose phosphate pathway.
     
  0.800
exuR
Transcriptional regulator (LacI family).
 
     0.768
uxaB#
Hypothetical protein UxaB# (N-terminal part).
       0.664
mtlD
Mannitol-1-phosphate dehydrogenase.
 
  
 0.627
kipR
Transcriptional regulator (IclR family).
 
  
 0.503
yvrH1
Transcriptional regulatory protein yvrH;, Signal transduction response regulator, receiver region, Transcriptional regulatory protein, C terminal, cztR_silR_copR: heavy metal response regulator.
       0.475
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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