STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjqAConserved hypothetical protein; PBSX phage. (125 aa)    
Predicted Functional Partners:
yybA
Putative transcriptional regulator (MarR family).
      
 0.765
ynbA
Putative GTP-binding protein protease modulator.
      
 0.763
yobS
Putative transcriptional regulator.
      
 0.763
manA
Mannose-6 phosphate isomerase; cupin family.
      
 0.705
ykaA
Putative Pit accessory protein.
      
 0.703
rok
Repressor of comK.
      
 0.596
yjqB
Putative PBSX phage-related replication protein.
  
    0.553
ykuN
Short-chain flavodoxin.
      
 0.547
opuCA
Glycine betaine/L-proline transport ATP-binding subunit, ABC transporter, proV: glycine betaine/L-proline transport ATP binding subunit.
      
 0.547
ykuJ
Conserved hypothetical protein.
      
 0.488
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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