STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykuOConserved hypothetical protein. (297 aa)    
Predicted Functional Partners:
ykuP
Short-chain flavodoxin.
  
  
 0.988
ykuN
Short-chain flavodoxin.
  
    0.934
dhbC
Isochorismate synthase.
   
    0.902
dhbB
Isochorismatase.
   
    0.797
feuA
Iron hydroxamate-binding lipoprotein.
   
    0.781
yvrB
Putative vitamin B12 permease.
   
    0.773
dhbA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-acyl carrier protein reductase;, Short-chain dehydrogenase/reductase SDR, short chain dehydrogenase, 3oxo_ACP_reduc: 3-oxoacyl-(acyl-carrier-protein) reductase.
   
    0.710
besA
Trilactone hydrolase; 'iron acquisition'.
   
    0.680
dhbE
2,3-dihydroxybenzoate-AMP ligase (enterobactin synthetase component E).
   
    0.670
yxeB
ABC transporter (ferrioxamine binding lipoprotein).
   
    0.655
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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