STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
sirBSirohydrochlorin ferrochelatase. (261 aa)    
Predicted Functional Partners:
sirC
Precorrin-2 dehydrogenase.
 
 
 0.998
sumT
Uroporphyrinogen III and precorrin-1 C-methyltransferase.
  
 0.996
cysH
(phospho)adenosine phosphosulfate reductase.
 
  
 0.888
cysC
Adenylylsulfate kinase.
  
    0.880
nasF
uroporphyrin-III C-methyltransferase.
 
  
 0.871
nasE
Assimilatory nitrite reductase subunit.
  
  
 0.844
sat
Sulfate adenylyltransferase.
  
  
 0.811
cysP
Sulfate permease.
  
  
 0.760
yflN
Putative metal-dependent hydrolase.
      
 0.721
yheI
ATP-binding cassette, subfamily B, multidrug efflux pump; Lipid A export ATP-binding/permease protein msbA;, ABC transporter integral membrane type 1, ABC transporter, MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA.
      
 0.721
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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