STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoZOmega subunit of RNA polymerase. (67 aa)    
Predicted Functional Partners:
rpoA
RNA polymerase (alpha subunit).
  
 0.997
rpoB
RNA polymerase (beta subunit).
  
 0.993
rpoC
RNA polymerase (beta' subunit).
  
 0.990
gmk
Guanylate kinase.
  
  
 0.959
rpsB
Ribosomal protein S2.
  
 
 0.939
sigA
RpoD; 'information pathways; RNA synthesis; Initiation'.
   
 
 0.930
rsmB
RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent.
  
 
 0.919
ykzG
Conserved hypothetical protein; UPF0356, DUF1447 family.
   
 
 0.915
rplF
Ribosomal protein L6 (BL8).
   
   0.914
rplJ
Ribosomal protein L10 (BL5).
  
 
 0.912
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.