STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
defAPolypeptide deformylase. (160 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase.
 
 0.979
yloN
Putative Fe-S-cluster AdoMet radical enzyme.
 
  
 0.886
rsmB
RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent.
  
  
 0.876
rpe
Ribulose-5-phosphate 3-epimerase.
 
   
 0.848
rplT
Ribosomal protein L20.
 
   0.847
prpC1
Phosphorylated protein phosphatase.
  
    0.845
prkC
Protein kinase.
       0.841
rplU
Ribosomal protein L21 (BL20).
 
 
 0.824
cpgA
GTPase involved in ribosome and sacculus morphogenesis.
       0.819
rplR
Ribosomal protein L18.
  
 
   0.818
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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