STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yloVPutative dihydroxyacetone/glyceraldehyde kinase. (555 aa)    
Predicted Functional Partners:
yloU
Conserved hypothetical protein.
 
  
 0.997
degV
Fatty acid binding protein; 'unknown; Similar to unknown proteins from B. subtilis'.
 
 0.996
yitS
Conserved hypothetical protein.
 
 0.992
recG
Branch migrating ATP-dependent DNA helicase involved in DNA recombination and repair.
  
    0.746
plsX
phosphate:acyl-ACP acyltransferase.
 
  
 0.714
sdaAB
L-serine dehydratase (beta chain).
     
 0.702
sdaAA
L-serine dehydratase (alpha chain).
     
 0.683
yqhY
Conserved hypothetical protein; 16.6: Maintain16.13: Shape.
 
  
 0.682
rpmB
Ribosomal protein L28.
       0.661
polC
DNA polymerase III (alpha subunit).
 
     0.618
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.