STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylqGPutative glycosyltransferase. (567 aa)    
Predicted Functional Partners:
ylqH
Putative flagellar biosynthesis protein.
  
    0.933
rnhB
Ribonuclease HII.
  
    0.921
ylxF
Putative kinesin-like protein.
 
    0.810
fliK
Flagellar hook-length control protein.
 
    0.810
fliZ
Flagellar regulatory protein.
 
    0.800
fliJ
Flagellar synthesis chaperone.
 
    0.794
ylxL
Coupling factor for flagellin transcription and translation.
 
     0.764
ytlQ
Putative hydrolase.
  
    0.759
ydaN
Putative regulator.
  
     0.752
ywhK
Factor interacting with DNA helicase PcrA; Uncharacterized protein ywhL;, WD40/YVTN repeat-like-containing domain.
  
     0.750
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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