STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvrH3yvrH; 'information pathways; RNA synthesis; Regulation'. (235 aa)    
Predicted Functional Partners:
yvrG1
YvrG; 'cell envelope and cellular processes; Sensors (signal transduction)'.
 
   0.958
walK
Sensor protein kinase walK;, Signal transduction histidine kinase, core, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, phoR_proteo: phosphate regulon sensor kinase PhoR.
 0.954
walR
Transcriptional regulatory protein walR;, CheY-like, Response regulator receiver domain, PhoB: phosphate regulon transcriptional regulatory protein PhoB.
  
  
 
0.909
yvrG3
Two-component sensor histidine kinase YvrG innvolved in cell wall processes [YvrH].
 
 
 0.852
RBAM_032040
Sensor histidine kinase RBAM_032040; Alkaline phosphatase synthesis sensor protein phoR;, Signal transduction histidine kinase, core, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, phoR_proteo: phosphate regulon sensor kinase PhoR.
 
 0.840
RBAM_037320
Sensor histidine kinase mtrB;, Signal transduction histidine kinase, core, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, phoR_proteo: phosphate regulon sensor kinase PhoR.
 
 0.824
phoR
Two-component sensor histidine kinase.
 
 0.803
kinB
Two-component sensor histidine kinase.
  
   0.781
ybdK
Two-component sensor histidine kinase [YbdJ].
 
 
 0.761
spaK
Sensor histidine kinase spaK; Subtilin biosynthesis sensor protein spaK;, Signal transduction histidine kinase, core, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.760
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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