STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVAD3Stage V sporulation AD, Stage V sporulation protein AD (SpoVAD), spore_V_AD: stage V sporulation protein AD. (339 aa)    
Predicted Functional Partners:
spoVAC3
Sporulation stage V, protein AC, SpoVA protein, spore_V_AC: stage V sporulation protein AC.
 
  
 0.967
spoVAE3
Sporulation stage V, protein AE, SpoVA protein, spore_V_AE: stage V sporulation protein AE.
 
  
 0.958
spoVAC1
Sporulation stage V, protein AC, SpoVA protein, spore_V_AC: stage V sporulation protein AC.
 
  
 0.862
spoVAC5
Sporulation stage V, protein AC, SpoVA protein, spore_V_AC: stage V sporulation protein AC.
 
  
 0.862
spoVAC7
Sporulation stage V, protein AC, SpoVA protein, spore_V_AC: stage V sporulation protein AC.
 
  
 0.862
gpr
Spore endopeptidase.
  
  
 0.855
spoVAF
Stage V sporulation protein AF.
 
  
 0.834
spoVAE2
Sporulation stage V, protein AE, SpoVA protein, spore_V_AE: stage V sporulation protein AE.
 
  
 0.824
spoVAE
Sporulation stage V, protein AE, SpoVA protein, spore_V_AE: stage V sporulation protein AE.
 
  
 0.824
spoVAEB
Spore germinant protein.
 
  
 0.822
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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