STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yoaDPutative 2-hydroxyacid dehydrogenase. (290 aa)    
Predicted Functional Partners:
serC
Phosphoserine aminotransferase.
  
 0.979
yoaC
Hydroxylated metabolite kinase.
 
    0.961
serA
3-phosphoglycerate dehydrogenase.
 
  
 
0.919
pgm
Phosphoglycerate mutase.
    
 0.907
yoaB
YoaB; 'cell envelope and cellular processes; Transport/binding proteins and lipoproteins', uptake of alpha-ketoglutarate.
 
   0.841
yitJ
Methionine synthase / methylenetetrahydrofolate reductase(NADPH); Homocysteine S-methyltransferase using (R,S)AdoMet and methylenetetrahydrofolate reductase [NAD(P)H].
   
 
 0.779
udk
Uridine kinase.
   
  0.667
thrC
Threonine synthase.
 
  
 0.616
rplF
Ribosomal protein L6 (BL8).
    
   0.556
acuC
Protein deacetylase.
    
 0.514
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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