STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yozBPutative integral inner membrane protein. (178 aa)    
Predicted Functional Partners:
scuA
Assembly factor BSco of the Cu(A) site of cytochrome c oxidase.
  
 0.827
ctaA
heme-A synthase.
 
    0.641
ctaC
Cytochrome caa3 oxidase (subunit II).
  
    0.484
yocB
Conserved hypothetical protein.
       0.480
ydzA
Conserved hypothetical protein.
  
    0.469
ctaF
Cytochrome caa3 oxidase (subunit IV).
  
    0.455
ctaE
Cytochrome caa3 oxidase (subunit III).
       0.447
ctaB
Cytochrome caa3 oxydase assembly factor.
 
    0.400
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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