STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yocBConserved hypothetical protein. (260 aa)    
Predicted Functional Partners:
prmC
Glutamine methylase of release factor 1; Protein methyltransferase hemK; Protein-glutamine N-methyltransferase hemK; Protein-(glutamine-N(5)) MTase hemK; M.StyLTHemKP;, Modification methylase HemK, hemK_fam: methyltransferase, HemK family.
    
 0.853
rpsC
Ribosomal protein S3 (BS3).
   
 0.825
rplW
Ribosomal protein L23.
   
  0.773
ybyB
Conserved hypothetical protein.
  
    0.766
yflT
Heat stress induced protein.
  
    0.766
ykyA
Putative chromosome partitioning protein.
  
     0.725
rpsE
Ribosomal protein S5.
   
 0.706
rpsS
Ribosomal protein S19 (BS19).
   
  0.686
rpsL
Ribosomal protein S12 (BS12).
  
 0.679
yueE
Putative metal-dependent phosphohydrolase.
  
     0.674
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.