STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yocDPutative carboxypeptidase. (325 aa)    
Predicted Functional Partners:
dacC
D-alanyl-D-alanine carboxypeptidase.
 
  
 0.731
yocC
Conserved hypothetical protein.
       0.580
dacF
D-alanyl-D-alanine carboxypeptidase (penicilin binding protein).
    
 0.575
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5).
    
 0.567
cwlC
N-acetylmuramoyl-L-alanine amidase.
    
 0.567
dacB
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*).
    
 0.562
yodJ
D-alanyl-D-alanine carboxypeptidase lipoprotein.
     
 0.558
lytC
N-acetylmuramoyl-L-alanine amidase (major autolysin).
    
 0.518
yrvJ
Putative N-acetylmuramoyl-L-alanine amidase, family 3.
    
 0.509
cwlD
N-acetylmuramoyl-L-alanine amidase.
     
 0.506
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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