STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yocKPutative general stress protein. (215 aa)    
Predicted Functional Partners:
yvrE
Conserved hypothetical protein.
   
  
 0.805
yhdF
Similar to glucose 1-dehydrogenase; General stress protein 39; GSP39;, Short-chain dehydrogenase/reductase SDR, short chain dehydrogenase, 3oxo_ACP_reduc: 3-oxoacyl-(acyl-carrier-protein) reductase.
   
  
 0.785
yocL
Hypothetical protein.
       0.773
yflH
Conserved hypothetical protein.
      
 0.762
rpoC
RNA polymerase (beta' subunit).
  
 
 
 0.682
ctc
50S ribosomal protein L25; General stress protein CTC;, Ribosomal protein L25, Ribosomal L25p family, ctc_TL5: ribosomal protein L25, Ctc-form.
  
  
 0.656
rpoB
RNA polymerase (beta subunit).
   
 
 0.622
yciC
Putative metallochaperone with NTPase activity.
  
  
 0.579
rsbV
Anti-anti-sigma factor (antagonist of RsbW).
 
  
 0.570
rsbW
Switch protein/serine kinase and anti-sigma factor (inhibitory sigma-B binding protein).
   
  
 0.569
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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