STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sqhCSqualene-hopene cyclase. (627 aa)    
Predicted Functional Partners:
sodF
SodF; 'other functions; Detoxification', detoxification of oxygen radicals.
  
    0.858
yisP
Putative squalene/phytoene synthase.
  
  
 0.663
yfnG
CDP-glucose 4,6-dehydratase; UDP-glucose 4-epimerase 3; UDP-galactose 4-epimerase 3; Galactowaldenase 3;, CDP-glucose 4,6-dehydratase, NAD dependent epimerase/dehydratase family, CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase.
  
 
 0.585
RBAM_031220
NAD-dependent epimerase/dehydratase family protein; UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Galactowaldenase;, NAD(P)-binding domain, NAD dependent epimerase/dehydratase family, heptose_epim: ADP-L-glycero-D-manno-heptose-6-epimerase.
  
 
 0.585
baeG
BaeG; 'other functions; Antibiotic production; bacillaene biosynthesis'.
   
 
 0.567
dhaS
DhaS; 'intermediary metabolism; Metabolism of coenzymes and prosthetic groups'.
  
  
 0.545
yetO
Putative cytochrome P450 CYP102A2.
  
 
 0.480
cypB
Cytochrome P450 CYP102A3.
  
 
 0.480
hisB
Imidazoleglycerol-phosphate dehydratase.
      
 0.478
hisG
ATP phosphoribosyltransferase.
      
 0.476
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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