STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodFSodF; 'other functions; Detoxification', detoxification of oxygen radicals. (281 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase (exported lipoprotein).
   
 0.979
sqhC
Squalene-hopene cyclase.
  
    0.929
sodA
Superoxide dismutase.
  
  
 
0.909
rplQ
Ribosomal protein L17 (BL15).
   
   0.807
rpsK
Ribosomal protein S11 (BS11).
   
 
 0.795
rplO
Ribosomal protein L15.
   
 
 0.779
rplM
Ribosomal protein L13.
  
 
 0.776
rpoB
RNA polymerase (beta subunit).
    
 
 0.764
rplC
Ribosomal protein L3 (BL3).
   
 
 0.764
rpsQ
Ribosomal protein S17 (BS16).
   
   0.764
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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