Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBAM_019110RBAM_019110; 'unknown; No similarity'. (280 aa)    
Predicted Functional Partners:
yflN
Putative metal-dependent hydrolase.
  
     0.638
odhB
2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit).
       0.572
odhA
2-oxoglutarate dehydrogenase, E1 component, Dehydrogenase E1 component, 2oxo_dh_E1: 2-oxoglutarate dehydrogenase, E1 component.
  
    0.561
bI1
Probable intron-encoded endonuclease bI1; Contains: RecName: Full=Truncated non-functional cytochrome b; Contains: RecName: Full=Intron-encoded endonuclease bI1; Flags: Precursor;, Intron endonuclease, group I, grpIintron_endo: group I intron endonuclease.
  
     0.403
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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