STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodCSuperoxide dismutase (exported lipoprotein). (196 aa)    
Predicted Functional Partners:
sodA
Superoxide dismutase.
   
 0.997
katE
Catalase 2.
 
 0.987
sodF
SodF; 'other functions; Detoxification', detoxification of oxygen radicals.
   
 0.979
copA
Copper-exporting P-type ATPase A;, ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, E1-E2 ATPase, ATPase-IB_hvy: heavy metal translocating P-type ATPase.
   
 0.962
ahpC
Alkyl hydroperoxide reductase (small subunit).
   
 
 0.900
copZ
Copper insertion chaperone and transporter component; Copper-transporting ATPase RAN1; Protein RESPONSIVE TO ANTAGONIST 1;, ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, TIGR00003: copper ion binding protein.
  
 0.890
katX
Major catalase in spores.
  
 0.866
ydbD
Putative manganese-containing catalase.
   
 
 0.817
tkt
Tkt; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Main glycolytic pathways'.
   
   0.800
tpiA
Triose phosphate isomerase.
   
   0.756
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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