STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodCSuperoxide dismutase (exported lipoprotein). (196 aa)    
Predicted Functional Partners:
copA
Copper-exporting P-type ATPase A;, ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, E1-E2 ATPase, ATPase-IB_hvy: heavy metal translocating P-type ATPase.
   
 0.976
katE
Catalase 2.
 
 0.973
copZ
Copper insertion chaperone and transporter component; Copper-transporting ATPase RAN1; Protein RESPONSIVE TO ANTAGONIST 1;, ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, TIGR00003: copper ion binding protein.
  
 0.934
sodA
Superoxide dismutase.
   
 
 0.895
katX
Major catalase in spores.
  
 0.884
ydbD
Putative manganese-containing catalase.
   
 
 0.823
sodF
SodF; 'other functions; Detoxification', detoxification of oxygen radicals.
   
 
 0.707
ahpC
Alkyl hydroperoxide reductase (small subunit).
   
 
 0.692
katA
Vegetative catalase 1.
  
 0.684
qcrC
Menaquinol:cytochrome c oxidoreductase (cytochrome cc subunit).
    
 
 0.678
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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