STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cwlSCwlS; 'cell envelope and cellular processes; Cell wall'. (412 aa)    
Predicted Functional Partners:
cwlO
Secreted cell wall DL-endopeptidase; Peptidoglycan DL-endopeptidase cwlO; D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase; PSPA2; Flags: Precursor;, NLP/P60, NlpC/P60 family.
 
  
0.666
sodC
Superoxide dismutase (exported lipoprotein).
  
    0.658
lytG1
Glycoside Hydrolase Family 73; Probable N-acetylmuramidase; Peptidoglycan hydrolase; Autolysin; Lysozyme; Flags: Precursor;, Protein of unknown function DUF1306, Protein of unknown function (DUF1306).
   
 0.574
prkC
Protein kinase.
 
  
 0.565
phi105_20
Phage related protein phi105_20; Putative phage autolysin (amidase) homolog.
   
 0.537
lytH
Conserved hypothetical protein LytH; 'unknown; Similar to unknown proteins from B. subtilis'.
  
  
 0.509
yrvJ
Putative N-acetylmuramoyl-L-alanine amidase, family 3.
 
  
 0.503
lytG3
Exoglucosaminidase; 'cell envelope and cellular processes; Cell wall'.
   
 0.502
cwlC
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.479
ftsX
Cell-division ABC transporter.
 
   
 0.444
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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