STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yojFConserved hypothetical protein. (116 aa)    
Predicted Functional Partners:
yojG
Putative deacetylase.
 
    0.981
RBAM_019240
RBAM_019240; 'unknown; Similar to unknown proteins from other organisms'.
  
    0.818
yjcG
Putative RNA ligase or phosphoesterase.
  
     0.665
yojE
Putative integral inner membrane protein.
       0.633
yisL
Putative integral inner membrane protein.
  
     0.615
RBAM_037560
Uncharacterized protein ypjG;, N-acetylglucosaminyl phosphatidylinositol deacetylase, GlcNAc-PI de-N-acetylase.
 
    0.615
ctaG
Cytochrome aa(3) assembly factor.
  
     0.580
RBAM_031180
N-acetylglucosamine malate deacetylase 1; N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase; Phosphatidylinositol-glycan biosynthesis class L protein; PIG-L;, N-acetylglucosaminyl phosphatidylinositol deacetylase, GlcNAc-PI de-N-acetylase.
  
    0.562
ywhD
Conserved hypothetical protein.
  
     0.512
gerT
Spore coat proteinGerT; Involved in sporulation.
       0.480
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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