STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamALysine 2,3-aminomutase. (473 aa)    
Predicted Functional Partners:
yodP
Putative acetyltransferase.
  
 0.993
yodS
Putative aminoacyloate CoA-transferase.
  
  
 0.939
yodT
Putative aminovalerate aminotransferase.
  
  
 0.918
yodQ
Putative deacylase.
  
  
 0.911
yodR
Putative acyloate-acetoacetate CoA-transferase.
  
  
 0.906
racX
Amino acid racemase.
     
  0.900
racD
Aspartate racemase, Asp/Glu/Hydantoin racemase, asp_race: aspartate racemase.
     
  0.900
yokU
Conserved hypothetical protein; 18: Unknown function.
  
  
 0.898
lysA1
Diaminopimelate decarboxylase.
     
 0.813
cheR
Methyl-accepting chemotaxis proteins (MCPs) methyltransferase.
    
   0.796
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.