STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnSasparaginyl-tRNA synthetase. (430 aa)    
Predicted Functional Partners:
metS
methionyl-tRNA synthetase.
 
 0.990
gatB
glutamyl-tRNA(Gln) amidotransferase (subunit B).
  
 0.987
gatA
glutamyl-tRNA(Gln) amidotransferase (subunit A).
   
 0.983
proS
prolyl-tRNA synthetase.
  
 0.978
ileS
isoleucyl-tRNA synthetase.
  
 0.970
gatC
glutamyl-tRNA(Gln) amidotransferase (subunit C).
   
 0.965
gltX
glutamyl-tRNA synthetase.
  
 0.963
argS
arginyl-tRNA synthetase.
   
 0.961
leuS
leucyl-tRNA synthetase.
  
 0.960
lysS
lysyl-tRNA synthetase.
  
0.941
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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