STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypmAConserved hypothetical protein. (56 aa)    
Predicted Functional Partners:
ypmB
Conserved hypothetical protein.
 
  
 0.894
aspB
Putative aspartate aminotransferase.
  
    0.703
BAMF_0962
Putative holin; Integral membrane protein, Phage holin.
  
     0.650
ygxA
Conserved hypothetical protein.
  
     0.626
dinG
Damage inducible ATP-dependent helicase.
  
    0.605
ytzE
Putative transcriptional regulator (DeoR family).
  
     0.586
yneB
YneB; 'other functions; Transposon and IS'.
  
     0.565
yfjT
Conserved hypothetical protein.
  
     0.563
yqzM
Conserved hypothetical protein.
  
     0.545
yfhJ
Conserved hypothetical protein.
  
     0.529
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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