STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgsAMethylglyoxal synthase. (137 aa)    
Predicted Functional Partners:
cca
tRNA nucleotidyltransferase.
  
  
 0.954
birA
Biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor.
  
  
 0.946
ypjG
Conserved hypothetical protein; 18: Unknown function.
  
  
 0.942
ypjH
Putative enzyme in leucine catabolism or biotin metabolism.
  
  
 0.935
dapB
Dihydrodipicolinate reductase.
  
    0.923
RBAM_005990
Glycerol dehydrogenase; GLDH; GDH;, Alcohol dehydrogenase, iron-type, Iron-containing alcohol dehydrogenase.
     
 0.916
ytbE
Putative aldo/keto reductase.
     
 0.907
yvgN
Glyoxal/methylglyoxal reductase.
     
 0.907
ypjD
Nucleotide phosphohydrolase.
  
  
 0.879
coaE
Dephosphocoenzyme A kinase.
 
    0.867
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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