STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxdC1OxdC1; 'intermediary metabolism; Metabolism of carbohydrates and related molecules; Specific pathways'. (391 aa)    
Predicted Functional Partners:
oxdC
Oxalate decarboxylase.
  
  
 
0.901
yjgC
Putative oxidoreductase.
     
  0.900
ykkE
Formyltetrahydrofolate hydrolase.
     
  0.900
yrhE
Putative oxido-reductase.
     
  0.900
mdh
Malate dehydrogenase.
    
  0.801
pycA
Pyruvate carboxylase.
     
  0.800
mleA
NAD-dependent malic enzyme (conversion of malate into pyruvate).
     
  0.800
ytsJ
NADP-dependent malic enzyme (conversion of malate into pyruvate).
     
  0.800
pckA
Phosphoenolpyruvate carboxykinase.
     
  0.800
fumC
Fumarate hydratase.
     
  0.800
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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