STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qcrAMenaquinol:cytochrome c oxidoreductase (iron-sulfur subunit). (167 aa)    
Predicted Functional Partners:
ctaC
Cytochrome caa3 oxidase (subunit II).
 
 0.999
qcrC
Menaquinol:cytochrome c oxidoreductase (cytochrome cc subunit).
 
 0.999
qcrB
Menaquinol:cytochrome c oxidoreductase (cytochrome b subunit).
 
 0.999
ctaE
Cytochrome caa3 oxidase (subunit III).
 
 
 0.976
cccA
Cytochrome c550.
 
 
 0.976
cccB
Cytochrome c551.
 
 
 0.975
ctaD
Cytochrome caa3 oxidase (subunit I).
 
 
 0.945
sdhB
Succinate dehydrogenase (iron-sulfur protein).
 
 
 0.924
qoxC
Cytochrome aa3-600 quinol oxidase (subunit III).
  
 
 0.910
ypiF
Conserved hypothetical protein.
 
    0.907
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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