STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrAPrephenate dehydrogenase. (368 aa)    
Predicted Functional Partners:
aroE
3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvoylshikimate-3-phosphate synthase).
  
 0.997
hisC
Histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase.
  
 
 0.992
pheA
Prephenate dehydratase.
 
 0.987
aroA
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; chorismate mutase-isozyme 3.
 0.985
aroH
Chorismate mutase.
 
 
  0.961
aroF
Chorismate synthase.
 
 
 0.927
yhdR
Putative aspartate aminotransferase.
  
 
 0.912
aspB
Putative aspartate aminotransferase.
  
 
 0.910
yszB
Conserved hypothetical protein containing an ACT domain; not chorismate mutase.
     
 0.907
trpA
Tryptophan synthase (alpha subunit).
 
  
 0.847
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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