STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hepTHeptaprenyl diphosphate synthase component II. (320 aa)    
Predicted Functional Partners:
hepS
Heptaprenyl diphosphate synthase component I.
 
 
 0.985
uppS
Undecaprenyl pyrophosphate synthase.
 
 
 0.957
menH
Menaquinone methyltransferase.
 
  
 0.939
ispA3
Geranyltranstransferase.
  
  
 
0.909
yisP
Putative squalene/phytoene synthase.
  
 0.906
ndk
Nucleoside diphosphate kinase.
 
 
 0.803
dxr
1-deoxy-D-xylulose-5-phosphate reductoisomerase.
  
  
 0.730
menA
1, 4-dihydroxy-2-naphthoateoctaprenyltransferase.
 
  
 0.725
ydcC
Putative lipoprotein.
  
  
 0.706
moaB
Molybdopterin GTP-binding precursor Z biosynthesis component.
     
 0.662
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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