STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypfAPutative cyclic diGMP binding protein. (218 aa)    
Predicted Functional Partners:
flgM
Anti-sigma factor repressor of sigma(D)-dependent transcription.
 
  
 0.860
fliD
Flagellar hook-associated protein 2; HAP2; Filament cap protein; Flagellar cap protein;, Flagellar hook-associated 2, C-terminal, Flagellar hook-associated protein 2 C-terminus.
 
  
 0.840
yvyG
Putative flagellar protein.
 
  
 0.830
ykoW
Putative sensor protein.
  
  
 0.810
fliZ
Flagellar regulatory protein.
 
    0.805
ypeB
Spore membrane component.
 
     0.799
fliS
Flagellar assembly protein FliS.
  
  
 0.781
cheV
Coupling protein and response regulator for CheA activity in response to attractants (chemotaxis).
  
  
 0.780
fliY
Flagellar motor switching and energizing phosphatase.
 
  
 0.772
cmk
Cytidylate kinase.
  
    0.772
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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