STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypbEConserved hypothetical protein. (258 aa)    
Predicted Functional Partners:
ypbD
Putative membrane protease.
  
    0.818
ypbB
Conserved hypothetical protein.
       0.780
recQ
ATP-dependent DNA helicase.
  
    0.770
csbA
Putative membrane protein.
  
     0.769
yrrS
Conserved hypothetical protein.
  
 
 
 0.762
ywqB
Putative replication initiation protein.
  
     0.759
yqgU
Putative lipoprotein.
  
     0.748
ypeQ
Conserved hypothetical protein.
  
     0.740
ykvS
Conserved hypothetical protein.
  
     0.724
yjbL
Putative phosphatase.
  
     0.722
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.