STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIMAutolysin component for dissolution of the septal cell wall (stage II sporulation). (214 aa)    
Predicted Functional Partners:
spoIIGA
Protease processing pro-sigma-E.
  
  
 0.868
spoIIE
Stage II sporulation protein E; Stage II sporulation protein H;, Sporulation stage II, protein E, Stage II sporulation protein E, spore_II_E: stage II sporulation protein E.
  
   
 0.850
spoIIIAB
Stage III sporulation protein.
  
  
 0.838
spoIIIAG
Stage III sporulation engulfment assembly protein.
  
   
 0.828
ylbJ
Putative factor required for spore cortex formation.
  
   
 0.822
spoIIIAE
Stage III sporulation protein.
  
  
 0.821
yqfC
Conserved hypothetical protein.
  
   
 0.804
spoIIIAF
Stage III sporulation protein.
  
   
 0.802
spoIIIAC
Stage III sporulation protein.
  
  
 0.790
spoIIP
Spore autolysin (stage II sporulation).
  
   
 0.769
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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