Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqjXConserved hypothetical protein; 16.8: Protect16.5: Explore16.6: Maintain. (114 aa)    
Predicted Functional Partners:
polYB
Y family DNA polymerase V bypassing lesions during replication.
 
     0.877
yvbF
Putative transcriptional regulator.
  
     0.721
yvaV
YvaV; Winged helix repressor DNA-binding.
  
     0.701
yuaC
Putative transcriptional regulator.
  
     0.659
yqzH
Hypothetical protein.
       0.531
RBAM_021860
RBAM_021860; 'unknown; Similar to unknown proteins from B. subtilis'.
 
     0.502
ybyB
Conserved hypothetical protein.
  
     0.475
yqjY
Putative acetyltransferase.
       0.462
yitO
Putative integral inner membrane protein with HTTM domain.
  
     0.456
yndJ
Putative integral inner membrane protein.
  
     0.432
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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