STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpD2-methylcitrate dehydratase. (475 aa)    
Predicted Functional Partners:
prpB
2-methylisocitrate lyase.
 
  
 0.995
citZ
Citrate synthase II.
 
 0.973
prpC3
2-methylcitrate synthase.
 
 0.971
citB
CitB; 'related molecules;intermediary metabolism; Metabolism of carbohydrates and TCA cycle'.
 
 
 0.935
citA
Citrate synthase I.
 
 0.853
mmgC
Short chain acyl-CoA dehydrogenase.
  
  
 0.826
yngE
Putative propionyl-CoA carboxylase.
  
    0.788
mmgA
Degradative acetoacetyl-CoA thiolase.
  
  
 0.780
mmgB#
3-hydroxybutyryl-CoA dehydrogenase; Fatty acid oxidation complex subunit alpha; Includes: RecName: Full=Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase;, 6-phosphogluconate dehydrogenase, C-terminal-like, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain.
  
    0.757
mmgB
3-hydroxybutyryl-CoA dehydrogenase.
  
    0.757
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
Server load: low (32%) [HD]