STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIAEStage III sporulation protein. (402 aa)    
Predicted Functional Partners:
spoIIIAF
Stage III sporulation protein.
 
  
 0.997
spoIIIAD
Stage III sporulation protein.
 
  
 0.997
spoIIIAG
Stage III sporulation engulfment assembly protein.
 
  
 0.993
spoIIIAB
Stage III sporulation protein.
 
  
 0.988
spoIIIAC
Stage III sporulation protein.
 
  
 0.980
spoIIIAH
Stage III sporulation ratchet engulfment protein.
 
  
 0.965
spoIIIAA
ATP-binding stage III sporulation protein.
 
  
 0.964
spoIIID
Stage III sporulation protein D; 14 kDa transcription factor;, Sporulation stage III, transcriptional regulator SpoIIID, spore_III_D: sporulation transcriptional regulator SpoIIID.
  
    0.918
accB
acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit).
     
 0.906
spoIIM
Autolysin component for dissolution of the septal cell wall (stage II sporulation).
  
  
 0.841
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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