STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqfUPutative integral inner membrane protein. (293 aa)    
Predicted Functional Partners:
ydcA
Conserved hypothetical protein.
   
  
 0.764
ydcC
Putative lipoprotein.
      
 0.763
moaB
Molybdopterin GTP-binding precursor Z biosynthesis component.
      
 0.763
ydbT
Conserved hypothetical protein.
      
 0.761
yfhS
Conserved hypothetical protein.
      
 0.680
ydbM
Putative acyl-CoA dehydrogenase.
      
 0.628
panB
Ketopantoate hydroxymethyltransferase.
     
 0.602
thrC
Threonine synthase.
     
 0.601
hepT
Heptaprenyl diphosphate synthase component II.
      
 0.598
yqfT
Conserved hypothetical protein.
       0.591
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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