STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA double strand break repair and homologous recombination factor. (255 aa)    
Predicted Functional Partners:
recR
DNA repair and recombination protein.
 
 
 0.976
ssbA
Single-strand DNA-binding protein.
 
 
 
 0.840
recJ
Putative single-strand DNA-specific exonuclease.
 
   
 0.833
phoH
Phosphate starvation-induced protein.
  
    0.810
ssbB
Single-strand DNA-binding protein; 'information pathways; DNA replication'.
   
 
 0.779
era
GTP-binding protein.
  
  
 0.777
rnc
Ribonuclease III.
 
  
 0.767
dprA
DNA processing Smf single strand binding protein.
     
 0.758
subA
Uncharacterized protein yabK;, Uncharacterised protein family YabK.
      
 0.657
recX
Regulatory protein RecX.
 
  
 0.630
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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