STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBAM024050RBAM024050; 'unknown; Similar to unknown proteins from other organisms'. (280 aa)    
Predicted Functional Partners:
baeJ
Bacillaene synthesis; hybrid NRPS/PKS protein.
  
 0.943
ituA
Iturin A synthetase A (B. subtilis); 'other functions; Antibiotic production; Nonribosomal synthesis of iturinA'.
  
 0.942
yhfK
Putative epimerase.
  
 0.840
baeM
Bacillaene synthesis; polyketide synthase of type I.
  
 0.799
yhfW
Putative Rieske [2Fe-2S] oxygenase.
  
   0.778
ctaC
Cytochrome caa3 oxidase (subunit II).
    
   0.766
baeL3
Bacillaene synthesis; Putative polyketide synthase pksM;, Beta-ketoacyl synthase, Beta-ketoacyl synthase, N-terminal domain.
  
 0.735
RBAM_024060#
RBAM_024060#; PadR-family transcriptional regulator, N-term fragment.
       0.729
srfAB
Nonribosomal surfactin synthetase SrfAB; Bacitracin synthetase 1; BA1; Includes: RecName: Full=ATP-dependent isoleucine adenylase; IleA; Isoleucine activase; Includes: RecName: Full=ATP-dependent cysteine adenylase; CysA; Cysteine activase; Includes: RecName: Full=ATP-dependent leucine adenylase; LeuA; Leucine activase; Includes: RecName: Full=ATP-dependent glutamate adenylase; GluA; Glutamate activase; Includes: RecName: Full=ATP-dependent isoleucine adenylase; IleA; Isoleucine activase; Includes: RecName: Full=Glutamate racemase;, Amino acid adenylation, AMP-binding enzyme, AA-adenyl [...]
  
 0.728
srfAC
Nonribosomal surfactin synthetase C.
   
 0.706
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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