STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydeE3[KO:K07506 K07471], Uncharacterized HTH-type transcriptional regulator ydeE;, Bacterial transcription activator, effector binding. (94 aa)    
Predicted Functional Partners:
rpoA
RNA polymerase (alpha subunit).
    
 
 0.908
sigA
RpoD; 'information pathways; RNA synthesis; Initiation'.
    
 
 0.806
rpoB
RNA polymerase (beta subunit).
    
   0.796
rpoC
RNA polymerase (beta' subunit).
    
   0.789
rpoZ
Omega subunit of RNA polymerase.
    
   0.789
RBAM024050
RBAM024050; 'unknown; Similar to unknown proteins from other organisms'.
 
   
 0.551
ituA
Iturin A synthetase A (B. subtilis); 'other functions; Antibiotic production; Nonribosomal synthesis of iturinA'.
     
 0.533
RBAM024060
RBAM024060; 'unknown; Similar to unknown proteins from other organisms'.
  
    0.533
RBAM_024060#
RBAM_024060#; PadR-family transcriptional regulator, N-term fragment.
  
    0.508
xkdU
Conserved hypothetical protein xkdU; 16.5: Explore.
  
     0.489
Your Current Organism:
Bacillus amyloliquefaciens DSM 7 ATCC 23350
NCBI taxonomy Id: 692420
Other names: B. amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens ATCC 23350, Bacillus amyloliquefaciens DSM 7, Bacillus amyloliquefaciens DSM 7 = ATCC 23350, Bacillus amyloliquefaciens str. DSM 7, Bacillus amyloliquefaciens strain DSM 7
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